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Yet Another Contig Ordering

creating figures showing overall similarity between genomes

Multiple Sequence Alignment shrinking

Estimating Genome Medoid

Creating figures showing linear maps between genomes

Find characters shared by a group of aligned sequences

Extracting a nucleotide segment from a FASTA-formatted file

Translating the maximum number of codons using the minimum number of ORFs

Building a supermatrix of characters from a set of multiple sequence alignments

Fast removal of contaminating reads from FASTQ file(s)

creating figures that represent the positions of long repeats in a chromosome

MeRIP-Seq pipeline analysis for m6a methylation site detection Author: Christophe Bécavin, Hub Bioinformatic and Biostatistic, Institut Pasteur

Big Image Tools - Read and write large 2D images with Icy

Repository containing code and data for the paper by Bosetti et al. "Epidemiology and control of SARS-CoV-2 epidemics in partially vaccinated populations: a modeling study applied to France"

Code and data for the article by Paireau et al. "An ensemble model based on early predictors to forecast COVID-19 healthcare demand in France"

Scripts to inject attc cassette in genome for Integron_Finder analysis