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QuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.

A open-source utility library for linear programming in Java with the simplex algorithm.

Track Manager plugin for Icy

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

Common parent POM for all Icy related projects

Tools to design and analyse CRISPRi experiments

Icy is an open community platform for bioimage informatics

Neural SDE generative model for Drosophila larva 2D contour trajectories

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Template to create new Icy extension (POM file and base plugin class)

EzPlug plugin for Icy

General python code for analysis pipeline

Real-time visualization of multiplex syndromic PCR panel sequencing for rapid pathogens detection