Building a multiple sequence alignment well-suited for phylogenetic analysis from read mapping data
Java3D library for Icy
A open-source utility library for linear programming in Java with the simplex algorithm.
The Oshi core library (JDK6) for Icy
Jama Matrix Package library for Icy
Low-level functions for interactive communication between Icy and Matlab.
Export sequences from Icy to Matlab *.mat files
This plugin is designed to manipulate binary masks over images.
It contains all the basic tools to manage such objects.
Extracts labeled objects from a binary or labeled image into ROI using connected component analysis
Clipper - A polygon clipping library
Big Image Tools - Read and write large 2D images with Icy
imglib2-icy ImgLib2 wrappers for Icy.
Fast removal of contaminating reads from FASTQ file(s)