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Bioimage Analysis / Workspace Editor
GNU General Public License v3.0 onlyUpdated 
GIPhy / SAM2MSA
GNU Affero General Public License v3.0Building a multiple sequence alignment wellsuited for phylogenetic analysis from read mapping data
Topics: phylogeneticsUpdated 
Bioimage Analysis / Video Recorder
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Java3D for Icy
GNU General Public License v3.0 onlyJava3D library for Icy
Updated 
Bioimage Analysis / Linear Programming
GNU General Public License v3.0 onlyA opensource utility library for linear programming in Java with the simplex algorithm.
Updated 
Bioimage Analysis / Oshi Core JDK6 for Icy
GNU General Public License v3.0 onlyThe Oshi core library (JDK6) for Icy
Updated 
Bioimage Analysis / Jama for Icy
GNU General Public License v3.0 onlyJama Matrix Package library for Icy
Updated 
Bioimage Analysis / Matlab Communicator
GNU General Public License v3.0 onlyLowlevel functions for interactive communication between Icy and Matlab.
Updated 
Bioimage Analysis / Matlab Exporter
GNU General Public License v3.0 onlyExport sequences from Icy to Matlab *.mat files
Updated 
Bioimage Analysis / Mask Editor
GNU General Public License v3.0 onlyThis plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.
Updated 
Bioimage Analysis / Label Extractor
GNU General Public License v3.0 onlyExtracts labeled objects from a binary or labeled image into ROI using connected component analysis
Updated 
Bioimage Analysis / Draw 3D Sphere VTK
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Clipper
GNU General Public License v3.0 onlyClipper  A polygon clipping library
Updated 
Bioimage Analysis / Kymograph Tracker
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Isotropic Wavelet
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Big Image Tools
MIT LicenseBig Image Tools  Read and write large 2D images with Icy
Updated 
Bioimage Analysis / Webcam Capture Library
GNU General Public License v3.0 onlyUpdated 

Bioimage Analysis / Tracking Benchmark Generator
GNU General Public License v3.0 onlyUpdated 
GIPhy / AlienRemover
GNU Affero General Public License v3.0Fast removal of contaminating reads from FASTQ file(s)
Topics: fastqUpdated