Explore projects
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GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTA-formatted scaffold sequence file
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Bioimage Analysis / Matlab Importer
GNU General Public License v3.0 onlyImport Matlab *.mat files as sequences in Icy
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Bioimage Analysis / Track Processor Time Clip
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Matlab IO
GNU General Public License v3.0 onlyLow-level library for reading and writing Matlab .mat files
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Bioimage Analysis / Label Extractor
GNU General Public License v3.0 onlyExtracts labeled objects from a binary or labeled image into ROI using connected component analysis
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Bioimage Analysis / Isotropic Wavelet
GNU General Public License v3.0 onlyUpdated -
IAH public / CellContactAnalyzer
GNU General Public License v3.0 onlyA Fiji tool to detect, track and analyze cell-to-cell contacts.
First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
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Bioimage Analysis / Soda Suite
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Linear Programming
GNU General Public License v3.0 onlyA open-source utility library for linear programming in Java with the simplex algorithm.
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Bioimage Analysis / Filter Toolbox
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Intensity Profile
GNU General Public License v3.0 onlyA plugin allowing to create a graphic showing the intensity profile of 2D ROIs
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Bioimage Analysis / Webcam Capture Example
GNU General Public License v3.0 onlyUpdated -
PFCCB / Cytokinesis
GNU Affero General Public License v3.0This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.
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Bioimage Analysis / Color Bar
GNU General Public License v3.0 onlyDisplay the colormap over the image using an overlay.
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Bioimage Analysis / Micro-Manager for Icy
GNU General Public License v3.0 onlyMicro-Manager plugin for Icy
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Bioimage Analysis / Micro-Manager Blocks
GNU General Public License v3.0 onlyBlocks (Protocols) for Micro-Manager plugin
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Bioimage Analysis / Gson - deprecated
GNU General Public License v3.0 onlyGson library plugin for Icy
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Bioimage Analysis / Workspace Editor
GNU General Public License v3.0 onlyUpdated