Explore projects

Code and data for the article by Paireau et al. "An ensemble model based on early predictors to forecast COVID-19 healthcare demand in France"

display a weight tree with D3 in R

This repository contains public data and script related to our observation study of gender impact on asking behavior during JOBIM 2021.

Source of the shiny server that presents results obtained by large scale double mutant yeast screens (GIM): http://hub05.hosting.pasteur.fr/GIM_interactions/

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

Pipeline to run CMS in large-scale analyses

Keeping R and Python specific snippets

Course material for the part about R and RStudio of the PhD course.

Git repository to host The PvSeroTAT RShiny app. This app provides a user-friendly interface to apply classification algorithms to detect recent infections by Plasmodium vivax, as detailed in the recent paper by Longley et al. (https://doi.org/10.1038/s41591-020-0841-4)

Code and data for the article "Integrating information from historical data into epidemic forecast: Application to influenza in France" by Alessio Andronico, Juliette Paireau and Simon Cauchemez

Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.

Sero-prevalence estimates for human coronaviruses