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Icy is an open community platform for bioimage informatics

description

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

Spot detector plugin for Icy

Active Contours plugin for Icy

HK-Means plugin for Icy

Track Manager plugin for Icy

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Template to create new Icy plugin (POM file and base plugin class)

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols

B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ

Big Image Tools - Read and write large 2D images with Icy

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"

SLIC: Simple Linear Iterative Clustering

An Icy plugin implementing this popular segmentation technique

creating figures that represent the positions of long repeats in a chromosome

Java3D library for Icy