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Icy is an open community platform for bioimage informatics

description

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

Spot detector plugin for Icy

Active Contours plugin for Icy

HK-Means plugin for Icy

Thresholder plugin for Icy

Track Manager plugin for Icy

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Template to create new Icy extension (POM file and base plugin class)

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

Icy wrapper for the Apache Commons CSV library.

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"