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Bioimage Analysis / JMF
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / FFT
GNU General Public License v3.0 onlyFast Fourier Transform Plugin for Icy
Updated 
Bioimage Analysis / JFree Common
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Apache Commons Codec
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / NHerve Image Analysis
GNU General Public License v3.0 onlyA toolbox to chain image analysis processes
Updated 
GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTAformatted scaffold sequence file
Updated 
Bioimage Analysis / Apache XMLBeans
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / NHerve Matrix
GNU General Public License v3.0 onlyA patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/
Updated 
Bioimage Analysis / Distance Transforms
GNU General Public License v3.0 onlyDistance Transforms Plugin for Icy
Updated 
Bioimage Analysis / Detection to ROI
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Mask Editor
GNU General Public License v3.0 onlyThis plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.
Updated 
Bioimage Analysis / Tracking Benchmark Generator
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Isotropic Wavelet
GNU General Public License v3.0 onlyUpdated 
Bioimage Analysis / Orthoviewer
GNU General Public License v3.0 onlyUpdated 
GIPhy / eFASTA
GNU Affero General Public License v3.0Extracting a nucleotide segment from a FASTAformatted file
Updated 
Bioimage Analysis / Draw 3D Sphere VTK
GNU General Public License v3.0 onlyUpdated 
IAH public / TrackingPerformance
BSD 3Clause "New" or "Revised" LicenseTools to measure tracking performance with the ISBI Challenge on SingleParticle Tracking metrics.
I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
Updated 
GIPhy / DNA2ORF
GNU Affero General Public License v3.0Translating the maximum number of codons using the minimum number of ORFs
Updated 