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A open-source utility library for linear programming in Java with the simplex algorithm.

FASTQ summary

This plugin is designed to manipulate binary masks over images. It contains all the basic tools to manage such objects.

Google Gson library for Icy : https://github.com/google/gson

ROI Inclusion Analysis plugin for Icy.

A toolbox to chain image analysis processes

Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.

A patched version of the Jama library. Internal structures accessors and package name added. The original version can be found here : http://math.nist.gov/javanumerics/jama/

My own toolbox used for all the plugins I developed.

Provides 3D vector mathematics classes.

This Icy plugin allows to compute and display the histogram of a sequence, with a more accurate control on the histogram parameters. It also enables the computation of histograms on ROIs.

Manage a list of ROIs that the user can store and pop back in one click.