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Icy is an open community platform for bioimage informatics

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Template to create new Icy extension (POM file and base plugin class)

description

Spot detector plugin for Icy

Active Contours plugin for Icy

HK-Means plugin for Icy

Thresholder plugin for Icy

Track Manager plugin for Icy

Extracting a nucleotide segment from a FASTA-formatted file

Jython library for Icy

Fiji plugin to register 3D movies and tracks of cells moving on fiber imaged in transmitted light.

Creating an AGP file from a FASTA-formatted scaffold sequence file

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j

The Apache Commons Lang Library for Icy

Google Gson library for Icy : https://github.com/google/gson