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IdA Public / Zellige-core
BSD 2-Clause "Simplified" LicenseUpdated -
Icy is an open community platform for bioimage informatics
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Bioimage Analysis / Plugin template
GNU General Public License v3.0 onlyTemplate to create new Icy plugin (POM file and base plugin class)
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Bioimage Analysis / Icy / Extensions / Workbooks
GNU General Public License v3.0 onlyToolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software
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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
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Bioimage Analysis / TensorFlow Manager
GNU General Public License v3.0 onlyThe TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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Bioimage Analysis / Icy / Extensions / Spot Detector
GNU General Public License v3.0 onlySpot detector plugin for Icy
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Bioimage Analysis / Icy / Extensions / Active Contours
GNU General Public License v3.0 onlyActive Contours plugin for Icy
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Bioimage Analysis / Icy / Extensions / HK-Means
GNU General Public License v3.0 onlyHK-Means plugin for Icy
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Bioimage Analysis / Icy / Extensions / Track Manager
GNU General Public License v3.0 onlyTrack Manager plugin for Icy
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Bioimage Analysis / Icy / Extensions / RSyntaxTextArea for Icy
GNU General Public License v3.0 onlyRSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.
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GIPhy / eFASTA
GNU Affero General Public License v3.0Extracting a nucleotide segment from a FASTA-formatted file
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Bioimage Analysis / Jython for Icy
GNU General Public License v3.0 onlyJython library for Icy
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GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTA-formatted scaffold sequence file
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Bioimage Analysis / Icy / Extensions / Filter Toolbox
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Icy / Extensions / GraalJS
GNU General Public License v3.0 onlyUpdated -
Gaëlle LETORT / cellsOnFiber
BSD 3-Clause "New" or "Revised" LicenseFiji plugin to register 3D movies and tracks of cells moving on fiber imaged in transmitted light.
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