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Icy is an open community platform for bioimage informatics

Template to create new Icy plugin (POM file and base plugin class)

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

description

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

Spot detector plugin for Icy

Active Contours plugin for Icy

HK-Means plugin for Icy

Thresholder plugin for Icy

Track Manager plugin for Icy

RSyntaxTextArea library for Icy. Badically it provides a TextArea component with syntax highlight for different languages.

Extracting a nucleotide segment from a FASTA-formatted file

Jython library for Icy

Creating an AGP file from a FASTA-formatted scaffold sequence file

Fiji plugin to register 3D movies and tracks of cells moving on fiber imaged in transmitted light.

imglib2-icy ImgLib2 wrappers for Icy.