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Icy is an open community platform for bioimage informatics

Template to create new Icy plugin (POM file and base plugin class)

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

description

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

Spot detector plugin for Icy

Active Contours plugin for Icy

HK-Means plugin for Icy

Track Manager plugin for Icy

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

MsgPack Core library for Icy.

https://msgpack.org/

SDK for 3D ROI creation and manipulation using polygonal (surface) and polyhedral (volume) meshes.

Plugin Library used to provide autocompletion to JTextComponents, such as JTextArea or JTextField.

Image segmentation by representative colors selection. Two versions are available : – thresholding – positive and negative colors selection and SVM learning

This plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi

Creates convex versions of regions of interests in 2D or 3D using the QuickHull library.

Cropping reads to reach homogeneous composition among positions