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IdA Public / Zellige-core
BSD 2-Clause "Simplified" LicenseUpdated -
Icy is an open community platform for bioimage informatics
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Bioimage Analysis / Plugin template
GNU General Public License v3.0 onlyTemplate to create new Icy plugin (POM file and base plugin class)
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Bioimage Analysis / Spot Detector
GNU General Public License v3.0 onlySpot detector plugin for Icy
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Bioimage Analysis / Active Contour
GNU General Public License v3.0 onlyActive Contours plugin for Icy
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Bioimage Analysis / Spot Tracking
GNU General Public License v3.0 onlySpot Tracking plugin for Icy
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Bioimage Analysis / Track Manager
GNU General Public License v3.0 onlyTrack Manager plugin for Icy
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Bioimage Analysis / Workbooks
GNU General Public License v3.0 onlyToolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software
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Bioimage Analysis / TensorFlow Manager
GNU General Public License v3.0 onlyThe TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
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Bioimage Analysis / MsgPack Core
GNU General Public License v3.0 onlyMsgPack Core library for Icy.
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Bioimage Analysis / 3D Mesh ROI
GNU General Public License v3.0 onlySDK for 3D ROI creation and manipulation using polygonal (surface) and polyhedral (volume) meshes.
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Bioimage Analysis / Auto Complete for Icy
GNU General Public License v3.0 onlyPlugin Library used to provide autocompletion to JTextComponents, such as JTextArea or JTextField.
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GIPhy / HCAP
GNU Affero General Public License v3.0Cropping reads to reach homogeneous composition among positions
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Bioimage Analysis / Label Extractor
GNU General Public License v3.0 onlyExtracts labeled objects from a binary or labeled image into ROI using connected component analysis
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Bioimage Analysis / Quickhull
GNU General Public License v3.0 onlyQuickHull library for Icy. Computes convex envelopes of random point sets in 2D or 3D.
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