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Icy is an open community platform for bioimage informatics

Template to create new Icy plugin (POM file and base plugin class)

description

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime

Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.

Spot detector plugin for Icy

HK-Means plugin for Icy

Track Manager plugin for Icy

Active Contours plugin for Icy

Toolbox to create and manipulate result tables with plug-ins and protocols, and export as text file or to your favorite spreadsheet software

Local z-projection via the determination of a plane of reference.

Intensity projection plugin. It does intensity project along depth or time with multiple algorithms: mean, max, median, variance, standard deviation, saturated sum. Projection can also be restricted to ROI.

Embed CPython in Java through JNI

Fast Fourier Transform Plugin for Icy

This project is dedicated to protocol blocks generating random objects:

doubles integers subimages