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Assembling SSU

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer

AEGIS2018 course practical

Estimating standard descriptive statistics from contig sequences

random files to ease the use of CentOS locally

Computing the probability that a phylogenetic tree is the result of a Yule process

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

my . * files

Restriction-modification scripts and profiles by Pedro Oliveira

Singularity bootstrap files

import from github

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez

Some experiments with parallel and functional programming.

COG annotation of CDS