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scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

This repository contains all the scripts used for the development of core genome MLST schemes for Klebsiella pneumoniae sensu stricto and two of its sublineages SL147 and SL307.

Assembling SSU

Pasteur Course on Integrative Structural Biology 2018

EMBO Course on Integrative Structural Biology 2019 http://meetings.embo.org/event/19-structural-biology

Estimating Genome Medoid

Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses

Program at https://webext.pasteur.fr/tekaia/BCGA2019/BCGA2019_Prog.html

Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html

Estimating standard descriptive statistics from FASTQ files

Fast greedy clustering of genomes based on minhash similarity

Pasteur Course on Integrative Structural Biology (ISB2017)