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Individual-based model of P. vivax transmission

Evolutionary Contact wrapper for ARIA software

Code and data for the article by Paireau et al. "An ensemble model based on early predictors to forecast COVID-19 healthcare demand in France"

Estimating standard descriptive statistics from FASTQ file

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez