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Low-level functions for interactive communication between Icy and Matlab.

Big Image Tools - Read and write large 2D images with Icy

Git repository to host The PvSeroTAT RShiny app. This app provides a user-friendly interface to apply classification algorithms to detect recent infections by Plasmodium vivax, as detailed in the recent paper by Longley et al. (https://doi.org/10.1038/s41591-020-0841-4)

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp

This project contains the latest PhageTerm software source repository (multi machine version).

Yet Another Contig Ordering

Export sequences from Icy to Matlab *.mat files

Some helpers for my HTS snakemake workflows.

SMARTdenovo assembly tool wrapped into a singularity for HPC cluster executions

creating figures showing overall similarity between genomes