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Cropping reads to reach homogeneous composition among positions

imglib2-icy ImgLib2 wrappers for Icy.

Inferring alien oligonucleotides (adapters, primers, ...) from FASTQ file

Embed CPython in Java through JNI

Use Icy as an image viewer from Matlab

Low-level library for reading and writing Matlab .mat files

Import Matlab *.mat files as sequences in Icy

Export sequences from Icy to Matlab *.mat files

Low-level functions for interactive communication between Icy and Matlab.

Perform ExTrack results in TrackMate.

EHCache 3 for Icy https://www.ehcache.org/

Big Image Tools - Read and write large 2D images with Icy

B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ