Explore projects

The impact of genetic diversity on gene essentiality within the E. coli species

Data and script for the paper on ICE vs CP

The impact of genetic diversity on gene essentiality within the E. coli species

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

script that makes a visual representation of a spot containing ICE.

Recent analyses on Stephanie's data

Open source code for AlphaFold.

Pytorch implementation of the Spline dist cell segmentation method

From experiences acquired developing https://gitlab.pasteur.fr/metagenomics/metagenedb, create a light version of it with FastAPI as a backend and SQLModel as ORM

version of gratin adapted for inference of fBM properties

This repo contains the script, model and parameters needed to train a StarDist model on the simulated dataset used in the ISBI Grand Challenge on Single-Particle Tracking.