Explore projects

delineation cutoff estimates

Course material for the part about R and RStudio of the PhD course.

Code and data for the article "Integrating information from historical data into mechanistic models for influenza forecasting" by Alessio Andronico, Juliette Paireau and Simon Cauchemez

scientific python course given in 2021

Genome de novo assembly from raw paired-end FASTQ files

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Some helpers for my HTS snakemake workflows.

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium