Explore projects
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Pierre LECHAT / rampart
GNU General Public License v3.0 onlyRead Assignment, Mapping, and Phylogenetic Analysis in Real Time
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Statistical-Genetics / RAISS
MIT LicenseA python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium
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Johann Dreo / qcluster
GNU Affero General Public License v3.0Updated -
Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.
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Véronique LEGRAND / PTV
GNU Affero General Public License v3.0This project contains the latest PhageTerm software source repository (multi machine version).
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Blaise LI / plotting_scripts
GNU General Public License v3.0 or laterSome scripts to plot results from my HTS pipelines.
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You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"
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Blaise LI / paraccumulators
GNU General Public License v3.0 or laterSome experiments with parallel and functional programming.
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scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)
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GIPhy / OGRI
GNU Affero General Public License v3.0Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)
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Quang tru HUYNH / miniconda3-python310-pytorch-cuda11.7
GNU General Public License v3.0 or laterUpdated -
Quang tru HUYNH / micromamba-py310-pytorch-cuda11.7
GNU General Public License v3.0 or laterUpdated -
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Metagenomics / metagenedb
MIT LicenseDjango based project to build metagenomics genes catalog
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hub / MeRIPSeq
GNU General Public License v3.0 onlyMeRIP-Seq pipeline analysis for m6a methylation site detection Author: Christophe Bécavin, Hub Bioinformatic and Biostatistic, Institut Pasteur
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