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A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Data and code of the article Rasoamalala et al. "Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar", Proceedings of the National Academy of Sciences (2025).

Downloading FASTQ files from ENA

Script to pre-process GWAS inputs

This contains the minimal necessary codes to reproduce the results from the manuscript "Invariant non-equilibrium promoter switching dynamics optimizes information flow in eukaryotes".