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Bioimage Analysis / Ruler Helper
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / RandomGenerators
GNU General Public License v3.0 onlyThis project is dedicated to protocol blocks generating random objects:
doubles integers subimagesUpdated -
IAH public / CellContactAnalyzer
GNU General Public License v3.0 onlyA Fiji tool to detect, track and analyze cell-to-cell contacts.
First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
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Bioimage Analysis / Intensity Profile
GNU General Public License v3.0 onlyA plugin allowing to create a graphic showing the intensity profile of 2D ROIs
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Repository containing scripts and data for the paper "Hozé et al., Lancet Public Health, Monitoring the proportion of the population infected by SARS-CoV-2 using age-stratified hospitalisation and serological data: a modelling study"
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Hervé MENAGER / galaxy-cwl-is-docker
Apache License 2.0Updated -
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imod / Laser control for QuickPALM
GNU General Public License v3.0 onlyPython GUI to control an AOTF.
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Bioimage Analysis / Connected Components
GNU General Public License v3.0 onlyThis plugin extracts groups of connected pixels in 2D and 3D based on their intensity and that of the background. Works on both binary and gray-scale data. Output can be pushed to the swimming pool for other plug-ins to further exploi
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Bioimage Analysis / Icy Random Crops
GNU General Public License v3.0 onlyAn Icy plugin made for random generation of crops on a given sequence
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Hippolyte VERDIER / gratin_fbm
Apache License 2.0version of gratin adapted for inference of fBM properties
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Bioimage Analysis / 3D Rotation
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Angle Descriptor
GNU General Public License v3.0 onlyUpdated -
Diogo BORGES LIMA / CombineTDP_BUP_data
GNU General Public License v3.0 onlySoftware capable of combine top-down and bottom-up proteomics data.
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Bioimage Analysis / BioFlow
GNU General Public License v3.0 onlyUpdated