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Blast approach is aimed to annotate a metagenomic sequencing using an approach mostly based on blast.

Github repo for reproducibility course

pipeline nextflow

Workflow that takes raw legiolist data and process it to be integrated in a legiolist intermine instance

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Scripts to inject attc cassette in genome for Integron_Finder analysis

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass