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Low-level functions for interactive communication between Icy and Matlab.

Big Image Tools - Read and write large 2D images with Icy

B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ

MsgPack Core library for Icy.

https://msgpack.org/

The Java Native Access (JNA) library for Icy

https://github.com/java-native-access/jna

The Oshi core library (JDK6) for Icy

https://github.com/oshi/oshi

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp

Google FlatBuffers library for Icy https://github.com/google/flatbuffers

DeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j

Google Gson library for Icy : https://github.com/google/gson

The Apache Commons Lang Library for Icy

Multiple Sequence Alignment shrinking

Block Mapping and Gathering with Entropy

creating figures that represent the positions of long repeats in a chromosome

Translating the maximum number of codons using the minimum number of ORFs

This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.

A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols

Tools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.

I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.

Clipper - A polygon clipping library

The TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime