Explore projects
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Bioimage Analysis / Matlab Communicator
GNU General Public License v3.0 onlyLow-level functions for interactive communication between Icy and Matlab.
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Bioimage Analysis / Big Image Tools
MIT LicenseBig Image Tools - Read and write large 2D images with Icy
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Bioimage Analysis / Icy BUnwarp
MIT LicenseB-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ
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Bioimage Analysis / MsgPack Core
GNU General Public License v3.0 onlyMsgPack Core library for Icy.
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Bioimage Analysis / Icy / Extensions / JNA library for Icy
GNU General Public License v3.0 onlyThe Java Native Access (JNA) library for Icy
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Bioimage Analysis / Oshi Core JDK6 for Icy
GNU General Public License v3.0 onlyThe Oshi core library (JDK6) for Icy
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Bioimage Analysis / JavaCPP library for Icy
GNU General Public License v3.0 onlyThe Bytedeco JavaCPP library for Icy
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Bioimage Analysis / Google FlatBuffers
GNU General Public License v3.0 onlyGoogle FlatBuffers library for Icy https://github.com/google/flatbuffers
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Bioimage Analysis / DeepLearning4J for Icy
GNU General Public License v3.0 onlyDeepLearning4J library for Icy. Website: https://deeplearning4j.konduit.ai/ Github: https://github.com/eclipse/deeplearning4j
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Bioimage Analysis / Icy / Extensions / Google Gson
GNU General Public License v3.0 onlyGoogle Gson library for Icy : https://github.com/google/gson
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The Apache Commons Lang Library for Icy
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GIPhy / MSAshrink
GNU Affero General Public License v3.0Multiple Sequence Alignment shrinking
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GIPhy / BMGE
GNU Affero General Public License v3.0Block Mapping and Gathering with Entropy
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GIPhy / RepeatPlot
GNU Affero General Public License v3.0creating figures that represent the positions of long repeats in a chromosome
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GIPhy / DNA2ORF
GNU Affero General Public License v3.0Translating the maximum number of codons using the minimum number of ORFs
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PFCCB / Cytokinesis
GNU Affero General Public License v3.0This Icy bioimage analysis plugin was developped to help biologists detect late cytokinetic bridges on static immunofluorescence images.
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A simple plugin to randomly assign colors to ROIs in sequences. Also available for protocols
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IAH public / TrackingPerformance
BSD 3-Clause "New" or "Revised" LicenseTools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.
I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
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Bioimage Analysis / Clipper
GNU General Public License v3.0 onlyClipper - A polygon clipping library
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Bioimage Analysis / TensorFlow Manager
GNU General Public License v3.0 onlyThe TensorFlow library manager plugin. This plugin allows users to choose the TF version to be used on runtime
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