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Quang tru HUYNH / gP2S
Apache License 2.0Updated -
IAH public / CellContactAnalyzer
GNU General Public License v3.0 onlyA Fiji tool to detect, track and analyze cell-to-cell contacts.
First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"
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Johann Dreo / algopattern
MIT LicenseEducational demo of design patterns which are useful for algorithmics
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Bioimage Analysis / Plugin template
GNU General Public License v3.0 onlyTemplate to create new Icy plugin (POM file and base plugin class)
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IAH public / LocalZProjector
BSD 3-Clause "New" or "Revised" LicenseLocal z-projection via the determination of a plane of reference.
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GIPhy / FASTA2AGP
GNU Affero General Public License v3.0Creating an AGP file from a FASTA-formatted scaffold sequence file
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Bio-Formats library patched for Icy. The patch consist of replacing Apache Commons IO library by a newer version and also replacing org.json library with the custom version embedded into Micro-Manager to make it work properly.
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IAH public / TrackingPerformance
BSD 3-Clause "New" or "Revised" LicenseTools to measure tracking performance with the ISBI Challenge on Single-Particle Tracking metrics.
I adapted and copied code from by N. Chenouard, F. De Chaumon and S. Dallongeville so that it can run in batch and without Icy.
Topics: trackingUpdated -
Thomas MENARD / springboot-maven3-centos
Apache License 2.0Updated -
Updated
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IdA Public / Zellige-core
BSD 2-Clause "Simplified" LicenseUpdated -
Bioimage Analysis / JOCL
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Track Intensity Profile - lagache
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Icy Random Crops
GNU General Public License v3.0 onlyAn Icy plugin made for random generation of crops on a given sequence
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Bioimage Analysis / Voronoi
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Ring ROI
GNU General Public License v3.0 onlyUpdated -
Bioimage Analysis / Spot Detection Utilities
GNU General Public License v3.0 onlyUpdated