Explore projects

Pipeline to run CMS in large-scale analyses

Fast distance-based phylogenetic inference from unaligned genome sequences

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

sPYce is a since cell and single nucleus ATAC-seq integration method across different species implemented in Python.

Utilities to make stats and plots from reads.

searching and extracting universal single-copy genes from PhyloM:bacteria

https://github.com/dialvarezs/alphafold

FASTQ summary

A web site for indeep

Fast greedy clustering of genomes based on minhash similarity

Yet Another Contig Ordering

majority-rule consensus of ML phylogenetic trees