Explore projects
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hub / ViralHostRangeDB
MIT LicenseUpdatedUpdated -
Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses
Program at https://webext.pasteur.fr/tekaia/BCGA2019/BCGA2019_Prog.html
Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html
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Trying to deconvolve single tag assignment for multiple molecules
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You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"
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GIPhy / JolyTree
GNU Affero General Public License v3.0Fast distance-based phylogenetic inference from unaligned genome sequences
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Hervé MENAGER / galaxy-cwl-is-docker
Apache License 2.0Updated -
GIPhy / wgetGenBankWGS
GNU Affero General Public License v3.0Downloading genome assembly files from GenBank or RefSeq
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Quang tru HUYNH / ISB2019
GNU General Public License v3.0 onlyEMBO Course on Integrative Structural Biology 2019 http://meetings.embo.org/event/19-structural-biology
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Blaise LI / libworkflows
GNU General Public License v3.0 or laterSome helpers for my HTS snakemake workflows.
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Blaise LI / libhts
GNU General Public License v3.0 or laterSome helpers for HTS data analyses.
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Blaise LI / libdeseq
GNU General Public License v3.0 or laterSome helpers to call DESeq2 using rpy2 in python.
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Blaise LI / libsmallrna
GNU General Public License v3.0 or laterDefining small RNAs in C. elegans.
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Blaise LI / plotting_scripts
GNU General Public License v3.0 or laterSome scripts to plot results from my HTS pipelines.
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Blaise LI / snakemake_wrappers
GNU General Public License v3.0 or laterSome wrappers for my snakemake HTS pipelines
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Metagenomics / metagenedb
MIT LicenseDjango based project to build metagenomics genes catalog
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Blaise LI / libreads
GNU General Public License v3.0 or laterUtilities to make stats and plots from reads.
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GIPhy / Gklust
GNU Affero General Public License v3.0Fast greedy clustering of genomes based on minhash similarity
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Blaise LI / bam25prime
GNU General Public License v3.0 or laterUtilities to collapse reads in bam files to their 5' end
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galaxy-team / galaxy-tools
GNU General Public License v3.0 or laterUpdated -
Icy is an open community platform for bioimage informatics
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