Explore projects

Pipeline to run CMS in large-scale analyses

Pipeline to run CMS in large-scale analyses

Course material for the part about R and RStudio of the PhD course.

This package contains deep learning models and related scripts for RoseTTAFold

HUB transcriptomic snakemake pipeline

Restriction-modification scripts and profiles by Pedro Oliveira

Region segmentation

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

ID-based RAG FastAPI: Integration with Langchain and PostgreSQL/pgvector

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

This project contains the latest PhageTerm software source repository (multi machine version).

Proxmox PVE.

Learning using it.

https://bbrancot.pages.pasteur.fr/prog-web-client-server/

Some scripts to plot results from my HTS pipelines.

searching and extracting universal single-copy genes from PhyloM:bacteria

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"