Explore projects

Region segmentation

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

This project contains the latest PhageTerm software source repository (multi machine version).

Some scripts to plot results from my HTS pipelines.

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

Some experiments with parallel and functional programming.

scripts to prepare gwas data for using PAINTOR (https://github.com/gkichaev/PAINTOR_V3.0)

Estimating pairwise OGRIs between genomes (ANI, AAI, POCP, ...)