Explore projects

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Some scripts to plot results from my HTS pipelines.

Some experiments with parallel and functional programming.

Defining small RNAs in C. elegans.

Utilities to make stats and plots from reads.

Some helpers for HTS data analyses.

Some helpers to call DESeq2 using rpy2 in python.

Small Haskell utility that extracts an attribute from gtf data.

Utilities to collapse reads in bam files to their 5' end

https://github.com/dialvarezs/alphafold

Restriction-modification scripts and profiles by Pedro Oliveira

Estimating standard descriptive statistics from FASTQ file

LILAMS - Leucine Isotopic Labeling Analysis by MALDI-TOF mass Spectrometry was a Python software project to perform quantitative data analysis on mass spectrometry results for proteins labeled with heavy amino acids. Historical archive.

This package contains deep learning models and related scripts for RoseTTAFold

import from github