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Data and code of the article Rasoamalala et al. "Unraveling the role of rat and flea population dynamics on the seasonality of plague epidemics in Madagascar", Proceedings of the National Academy of Sciences (2025).

sPYce is a since cell and single nucleus ATAC-seq integration method across different species implemented in Python.

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Data and code of the article Brault et al., Effect of nirsevimab on hospitalisations for respiratory syncytial virus bronchiolitis in France, 2023–24: a modelling study, The Lancet Child & Adolescent Health, 2024.

Code repository for the paper "An algorithm to build synthetic temporal contact networks based on close-proximity interactions data"

LIANA: a LIgand-receptor ANalysis frAmework