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Automatic detection of epithelial cell events as cell extrusion

Icy is an open community platform for bioimage informatics

Pipeline reconstructing the averaged dynamics of gene expression in the fly eye using the fixed samples.

This project serves as a repository for the code necessary for Pinon et al. 2025 paper.

https://bbrancot.pages.pasteur.fr/prog-web-client-server/

sPYce is a since cell and single nucleus ATAC-seq integration method across different species implemented in Python.

scientific python course given in 2021

Data analysis related to the manuscript: Harnessing Diversity Generating Retroelements for in vivo targeted hyper-mutagenesis