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Utilities to collapse reads in bam files to their 5' end

Blast approach is aimed to annotate a metagenomic sequencing using an approach mostly based on blast.

couchapp and input data parser to create capsuledb

Python code for the image analysis performed for the paper

"Clostridioides difficile binary toxin CDT induces biofilm-like persisting microcolonies" J. MEZA TORRES et al.