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MANOCCA test is based on covariance. This project implements MANOCCA, MANOVA and provides an simulation environment and an explainer.

Repository for snakemake rules

Converting Genbank files into EMBL-like files suitable for submission to ENA

Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-induced cleavage sites on amino acid sequences.

https://rapid-peptide-generator.readthedocs.io

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Some helpers for my HTS snakemake workflows.

A module handling basic fonctionnality needed in django project such as base.html using bootstrap, account settings, preferences management, ...

iPPI-DB - django application

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium

Data analysis related to the manuscript: Harnessing Diversity Generating Retroelements for in vivo targeted hyper-mutagenesis