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LILAMS - Leucine Isotopic Labeling Analysis by MALDI-TOF mass Spectrometry was a Python software project to perform quantitative data analysis on mass spectrometry results for proteins labeled with heavy amino acids. Historical archive.

Minimum Spanning Tree-based clustering

openbabel rpm recipes for iPPI-DB. 2.4.1 is too old and buggy on fingerprints and tanimoto, so until the next release we use custom rpms

Quality-aware fastq demultiplexer. The goal is to demultiplex fastq files where the barcode is contained in the read at a known position.

Estimating a confidence value at each branch of a phylogenetic tree from a matrix of pairwise evolutionary distances

Course material for the part about R and RStudio of the PhD course.

Rapid Peptides Generator (RPG) is a software dedicated to predict proteases-induced cleavage sites on amino acid sequences.

https://rapid-peptide-generator.readthedocs.io

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer