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Fast distance-based phylogenetic inference from unaligned genome sequences

compress nd2 files

legiolist deployment

Workflow that takes raw legiolist data and process it to be integrated in a legiolist intermine instance

SHAMAN is a SHiny application for Metagenomic ANalysis including the normalization, the differential analysis and mutiple visualization.

Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.

Extracting a nucleotide segment from a FASTA-formatted file

Translating and back-translating codon and amino-acid sequence files

Building a supermatrix of characters from a set of multiple sequence alignments

Fast greedy clustering of genomes based on minhash similarity

Deprojection of a 2D segmentation onto a 2.5D mesh

Local z-projection via the determination of a plane of reference.

Downloading genome assembly files from GenBank or RefSeq

Keeping R and Python specific snippets