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A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Preprocessing FASTQ files

2D viewer for behaving larvae, with manual and automatic behavior tagging capabilities

This will contain the minimal necessary codes to reproduce the image analysis (BF and IF) from the preprint https://arxiv.org/abs/2303.17522

Downloading genome assembly files from GenBank or RefSeq

Downloading FASTQ files from ENA

Common parent POM for all Icy related projects

Interface between MaggotUBA and the Nyx tagging UI

Backbone for automatic tagging backends; includes a Python implementation of PlanarLarvae.jl features and the Julia-Python communication layer

Shiny app for the analysis of single cell data