Minimum Spanning Tree-based clustering

The impact of genetic diversity on gene essentiality within the E. coli species

Asia-Pacific ICEMER cohort ran in Madang (Papua New-Guinea) in early 2020. The purpose of this repository is to centralize R scripts and developments to streamline the data extraction and analysis.

Miscellaneous stuff to deal with Ribo-seq data.

Distance Transforms Plugin for Icy

Sero-prevalence estimates for human coronaviruses

Docker for InterMine

Pipeline to run CMS in large-scale analyses

Workflow that takes raw legiolist data and process it to be integrated in a legiolist intermine instance

compress nd2 files

Repository for snakemake rules

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

library to visualize biological data: http://rplanel.pages.pasteur.fr/bioviz-js