wgetGenBankWGS downloads genome assembly files in FASTA format from the GenBank or RefSeq repositories

/etc/hosts with locally defined aliases

You can find here the HMM profiles and the macsyfinder models that was used in the paper Diversification of the type IV filament super-family into machines for adhesion, secretion, DNA transformation and motility.

Django Data Import Utilities

Modeling ricochet robot in OCaml

You can find here the scripts corresponding to this paper: "A simple, reproducible and cost-effective procedure to analyse gut phageome: from phage isolation to bioinformatic approach"

Bioinformatics and Genome Analyses 2019 - http://meetings.embo.org/event/19-genome-analyses

Previous events: http://webext.pasteur.fr/tekaia/BGA_courses.html

RIP-Seq and RNA-Seq of an RNA-binding protein secreted by Listeria monocytogenes which activates RIG-I signaling Secreted bacterial RNAs have recently emerged as a novel host-pathogen interaction mode. Naked RNA molecules are highly labile in the ext

General purpose image analysis filters in python

My website

gbk2ENA allows converting Genbank files into EMBL-like files suitable for submission to the ENA

Individual-based model of P. vivax transmission

AEGIS2018 course practical

A python package to impute the SNP summary statistics from neighboring SNPs summary statistics by taking advantage of linkage desiquilibrium