Codes and Data for the paper “SARS-CoV-2 IgG seroprevalence surveys in blood donors before the vaccination campaign, France 2020-2021”.

pipeline nextflow

Process the droplet chips using snakemake pipelines.

EHCache 3 for Icy https://www.ehcache.org/

Big Image Tools - Read and write large 2D images with Icy

B-spline registration adaptation for ICY based on BunwarpJ plugin from ImageJ

This repository is tied to project #17289 submitted by Prof. Anna-Bella Failloux. It will host all the developments around that project to help replicate the results from the article.

MsgPack Core library for Icy.

https://msgpack.org/

Pytorch implementation of the Spline dist cell segmentation method

Region segmentation

Github repo for reproducibility course

The Java Native Access (JNA) library for Icy

https://github.com/java-native-access/jna

The Oshi core library (JDK6) for Icy

https://github.com/oshi/oshi

The Bytedeco JavaCPP library for Icy

https://github.com/bytedeco/javacpp