COVID19 genome sequence data

Sero-prevalence estimates for human coronaviruses

Docker for InterMine

Pipeline to run CMS in large-scale analyses

Workflow that takes raw legiolist data and process it to be integrated in a legiolist intermine instance

compress nd2 files

Repository for snakemake rules

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

library to visualize biological data: http://rplanel.pages.pasteur.fr/bioviz-js

A Fiji tool to detect, track and analyze cell-to-cell contacts.

First reported in Samassa et al., 2020, "Shigella impairs human T lymphocyte responsiveness by hijacking actin cytoskeleton dynamics and TCR vesicular trafficking"

BrainBox is a web application that let's you annotate and segment 3D brain imaging data in real time, collaboratively.

A nextflow pipeline to analyze GWAS Summary Statistics with JASS. The pipeline execute:

clean and harmonize data with jass_preprocessing if specified impute data with RAISS create input data for JASS analyse group of trait with jass

Tools to design and analyse CRISPRi experiments