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Commit 12d31252 authored by Gaelle Letort's avatar Gaelle Letort
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with nap-epyseg

parent 4c366ad5
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1 merge request!22Epidev: pyplot, option non jointive, propagation changed
[metadata]
name = epicure
version = 0.2.5
version = 0.2.6
description = Napari plugin to manually correct epithelia segmentation in movies
long_description = file: README.md
long_description_content_type = text/markdown
......
......@@ -86,9 +86,7 @@ def start_epicure():
ut.show_error("This option requires the plugin napari-epyseg that is missing.\nInstall it and restart")
print("Running EpySeg with default parameters on the movie. To change the settings, use the napari-epyseg plugin outside of EpiCure or EpySeg module directly")
parameters = {"tile_width":32, "tile_height":32, "model":"epyseg default(v2)"}
print(Epic.img.shape)
segres = run_epyseg( Epic.img, parameters )
print(segres.shape)
segname = str(get_files.image_file.value)+"_epyseg.tif"
ut.writeTif( segres, segname, 1.0, "uint8", what="Epyseg results saved in " )
get_files.segmentation_file.value = segname
......
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