release v9.2:changeo_presto/v1.0 added

README.md

@@ -71,6 +71,11 @@ Hub-CDB Institut Pasteur & DSI Institut Pasteur
 
 Use the gitlab tag of the docker image (e.g., gitlab_v5.0) to get the description of the modifications below
 
+### 9.1
+
+Dockerfiles added: <br />
+python/3.9.10/changeo_presto/v1.0 at date 20221007: from ubuntu:20.04 & python v3.9.10 <br />
+
 
 ### 9.1
 

python/v3.9.10/changeo_presto/v1.0/building.log

@@ -14,7 +14,7 @@ pip install
 Collecting changeo
   Downloading changeo-1.2.0.tar.gz (150 kB)
 Collecting presto
-  Downloading presto-0.7.0.tar.gz (109 kB)
+  Downloading presto-0.7.1.tar.gz (108 kB)
 Requirement already satisfied: numpy>=1.8 in /usr/local/lib/python3.9/site-packages (from changeo) (1.22.3)
 Collecting scipy>=0.14
   Downloading scipy-1.9.1-cp39-cp39-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (43.9 MB)
@@ -33,23 +33,23 @@ Requirement already satisfied: six>=1.5 in /usr/local/lib/python3.9/site-package
 Building wheels for collected packages: changeo, presto, airr, yamlordereddictloader
   Building wheel for changeo (setup.py): started
   Building wheel for changeo (setup.py): finished with status 'done'
-  Created wheel for changeo: filename=changeo-1.2.0-py3-none-any.whl size=151660 sha256=1da03d675a1f10a4993486776169a5bbf3e4ca68ba36753db738aba8f7412b70
+  Created wheel for changeo: filename=changeo-1.2.0-py3-none-any.whl size=151660 sha256=f12e2054fd3b9c931d06ab0918a470941029a18abc8c67e9fa7c4ffc0244c509
   Stored in directory: /root/.cache/pip/wheels/32/a1/50/cf5b69a2449ebcb265a1ee6f6b809c4bc4a627aac4248bd626
   Building wheel for presto (setup.py): started
   Building wheel for presto (setup.py): finished with status 'done'
-  Created wheel for presto: filename=presto-0.7.0-py3-none-any.whl size=118994 sha256=cde97b319ba72f3d38928711992fd9a6f6de5876620e6289ccf8bf0d748179b1
-  Stored in directory: /root/.cache/pip/wheels/88/30/16/a90689aa0488c9f983dde0e83a40d21ec0f310dde44ffe89d7
+  Created wheel for presto: filename=presto-0.7.1-py3-none-any.whl size=118759 sha256=d78d55b6fc87f5bd0fc8b87a098ae78f8a0434c34760f1288d53b752118dac90
+  Stored in directory: /root/.cache/pip/wheels/5b/7a/39/8b014d72018c603ec142e9464aab27c09300969ffa5d818d9a
   Building wheel for airr (setup.py): started
   Building wheel for airr (setup.py): finished with status 'done'
-  Created wheel for airr: filename=airr-1.4.1-py3-none-any.whl size=46411 sha256=d931840e96e51768b39b2dcc662d9552814f1d02fae65c04feb793b5c6088393
+  Created wheel for airr: filename=airr-1.4.1-py3-none-any.whl size=46411 sha256=c75d5cc2fefb34f8620c43dd5fc5833914deef3b5623d958ec4b90462e975b29
   Stored in directory: /root/.cache/pip/wheels/63/fe/47/0adfcb284d62d9cdfe3bdaee34a5915d66fdb7fe05b4e49917
   Building wheel for yamlordereddictloader (setup.py): started
   Building wheel for yamlordereddictloader (setup.py): finished with status 'done'
-  Created wheel for yamlordereddictloader: filename=yamlordereddictloader-0.4.0-py3-none-any.whl size=4069 sha256=23d83bee7ca69f8e4e1ddf42253b3ad0cc476db714e14d104d40f9aca6434aae
+  Created wheel for yamlordereddictloader: filename=yamlordereddictloader-0.4.0-py3-none-any.whl size=4069 sha256=76ca69a4c5b78b47570bea767210fb79110fdd9f31b91eee00528cac8cf0ff67
   Stored in directory: /root/.cache/pip/wheels/26/be/2c/114a2da8d1eca28fc4ec769eab3304e854a8a2b5ca217ff9c5
 Successfully built changeo presto airr yamlordereddictloader
 Installing collected packages: PyYAML, yamlordereddictloader, scipy, presto, airr, changeo
-Successfully installed PyYAML-6.0 airr-1.4.1 changeo-1.2.0 presto-0.7.0 scipy-1.9.1 yamlordereddictloader-0.4.0
+Successfully installed PyYAML-6.0 airr-1.4.1 changeo-1.2.0 presto-0.7.1 scipy-1.9.1 yamlordereddictloader-0.4.0
 
 
 
@@ -77,7 +77,7 @@ mygene                3.2.2
 numpy                 1.22.3
 pandas                1.4.1
 pip                   21.2.4
-presto                0.7.0
+presto                0.7.1
 python-dateutil       2.8.2
 pytz                  2021.3
 PyYAML                6.0

ubuntu/v20.04/ig_analysis/v1.0/Dockerfile

@@ -63,6 +63,14 @@ RUN echo "\n\n\n\n================\n\napt-get update\n\n================\n\n\n\n
   && apt -y install $APT_LINUX_LIB \
     | tee -a building.log \
 
+RUN echo "\n\n\n\n================\n\Immcantation packages install (changeo & presto)\n\n================\n\n\n\n" >> /building.log \
+    && cd /usr/bin/
+    && git clone https://bitbucket.org/kleinstein/igphyml
+    | tee -a /building.log \
+    && export PATH="/usr/bin/igphyml/src:$PATH" # for igphyml tools
+
+
+
 RUN echo "\n\n\n\n================\n\IgPhyML install\n\n================\n\n\n\n" >> /building.log \
     && cd /usr/bin/
     && git clone https://bitbucket.org/kleinstein/igphyml