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Commit 4e5e5d7c authored by Gael  MILLOT's avatar Gael MILLOT
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trap removed in README because the best is to deal it with .profile

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...@@ -113,10 +113,8 @@ Modify the second line of the code below, and run from where the *main.nf* and * ...@@ -113,10 +113,8 @@ Modify the second line of the code below, and run from where the *main.nf* and *
``` ```
HOME_INI=$HOME HOME_INI=$HOME
HOME="${HELIXHOME}/nf_column_reorder/" # $HOME changed to allow the creation of .nextflow into /$HELIXHOME/nf_column_reorder/, for instance. See NFX_HOME in the nextflow software script HOME="${HELIXHOME}/nf_column_reorder/" # $HOME changed to allow the creation of .nextflow into /$HELIXHOME/nf_column_reorder/, for instance. See NFX_HOME in the nextflow software script
trap '' SIGINT
nextflow run --modules ${MODULES} main.nf -c nextflow.config nextflow run --modules ${MODULES} main.nf -c nextflow.config
HOME=$HOME_INI HOME=$HOME_INI
trap SIGINT
``` ```
...@@ -128,11 +126,9 @@ Modify the first and third lines of the code below, and run (results will be whe ...@@ -128,11 +126,9 @@ Modify the first and third lines of the code below, and run (results will be whe
VERSION="v1.0" VERSION="v1.0"
HOME_INI=$HOME HOME_INI=$HOME
HOME="${HELIXHOME}/nf_column_reorder/" # $HOME changed to allow the creation of .nextflow into /$HELIXHOME/nf_column_reorder/, for instance. See NFX_HOME in the nextflow software script HOME="${HELIXHOME}/nf_column_reorder/" # $HOME changed to allow the creation of .nextflow into /$HELIXHOME/nf_column_reorder/, for instance. See NFX_HOME in the nextflow software script
trap '' SIGINT
nextflow run --modules ${MODULES} gael-millot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config #github, or nextflow run --modules ${MODULES} http://github.com/gael-millot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config nextflow run --modules ${MODULES} gael-millot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config #github, or nextflow run --modules ${MODULES} http://github.com/gael-millot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config
nextflow run --modules ${MODULES} -hub pasteur gmillot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config # gitlab nextflow run --modules ${MODULES} -hub pasteur gmillot/nf_column_reorder -r $VERSION -c $HOME/nextflow.config # gitlab
HOME=$HOME_INI HOME=$HOME_INI
trap SIGINT
``` ```
......
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