Commits · 024c49a45bdb658d4eec9980b0b2529e7b236221 · Gael MILLOT / repertoire_profiler

Dec 17, 2024
- release v11.4: Zenodo input link updated · 024c49a4
  Gael MILLOT authored 2 months ago
  
  024c49a4
- release v11.3: Now a zip folder is accepted as input, explanations in nextflow.config are improved · c57996ef
  Gael MILLOT authored 2 months ago
  
  v11.3
  
  c57996ef
Dec 16, 2024
- attempt to use data from gitlab · fc380915
  Gael MILLOT authored 2 months ago
  
  fc380915
Dec 13, 2024
- release v11.2: Donut and Tree plots slightly improved · 89d7a73f
  Gael MILLOT authored 3 months ago
  
  v11.2
  
  89d7a73f
- graph improvement · a7f67a07
  Gael MILLOT authored 3 months ago
  
  a7f67a07
- release v11.1: Option comment_char = '' of read.table() for all .R files with read.table() in bin · 85bf6900
  Gael MILLOT authored 3 months ago
  
  v11.1
  
  85bf6900
Dec 12, 2024
- release v11.: Option comment_char = '' of read.table() for all .R files with read.table() in bin · a7919017
  Gael MILLOT authored 3 months ago
  
  a7919017
- release v11.0: Tree plots improved · 812514c3
  Gael MILLOT authored 3 months ago
  
  v11.0
  
  812514c3
- release v11.0: Tree plots improved · ec3f5d2b
  Gael MILLOT authored 3 months ago
  
  ec3f5d2b
Dec 11, 2024
- release v10.4: Donut plot legend corrected · f22c3aee
  Gael MILLOT authored 3 months ago
  
  v10.4
  
  f22c3aee
Dec 04, 2024
- trap removed in README because the best is to deal it with .profile · aad9c1b3
  Gael MILLOT authored 3 months ago
  
  aad9c1b3
Dec 03, 2024
- nextflow.config corrected: now the executor is correctly set · 16b119e2
  Gael MILLOT authored 3 months ago
  
  16b119e2
Nov 28, 2024
- helix update · 9f1472f6
  Gael MILLOT authored 3 months ago
  
  9f1472f6
Nov 03, 2024
- README improved · 0bbf83a5
  Gael MILLOT authored 4 months ago
  
  0bbf83a5
Oct 08, 2024
- README updated · 2687dc90
  Gael MILLOT authored 5 months ago
  
  2687dc90
Jul 24, 2024
- README improved · 46f7f853
  Gael MILLOT authored 7 months ago
  
  46f7f853
- README improved · 0f94f147
  Gael MILLOT authored 7 months ago
  
  0f94f147
Jul 19, 2024
- README improved · 840d3c4f
  Gael MILLOT authored 7 months ago
  
  840d3c4f
Jul 11, 2024
- Licence file added · 3ee6d1ad
  Gael MILLOT authored 8 months ago
  
  3ee6d1ad
May 29, 2024
- README improved · 6d5f5ec6
  Gael MILLOT authored 9 months ago
  
  6d5f5ec6
- README improved · b850a48f
  Gael MILLOT authored 9 months ago
  
  b850a48f
May 25, 2024
- release v10.3: Spaces removed in file names, Spaces removed in the first line... · 4b2ce3db
  Gael MILLOT authored 9 months ago
```
release v10.3: Spaces removed in file names, Spaces removed in the first line of each fasta file, .fas fasta extension allowed
```
  v10.3
  
  4b2ce3db
May 06, 2024
- Number of H-L sequences printed for circos · c4894d59
  Gael MILLOT authored 10 months ago
  
  c4894d59
May 02, 2024
- circos.R updated for selection of rows (even better) · 63e0a287
  Gael MILLOT authored 10 months ago
  
  63e0a287
- circos.R updated for selection of rows (better) · b4cb6507
  Gael MILLOT authored 10 months ago
  
  b4cb6507
- circos.R updated for selection of rows · cd81abf1
  Gael MILLOT authored 10 months ago
  
  cd81abf1
- circos_data_prep.R completed · f4b6c4ea
  Gael MILLOT authored 10 months ago
  
  f4b6c4ea
Apr 29, 2024
- tempo data prep for circos · fdb4e3d3
  Gael MILLOT authored 10 months ago
  
  fdb4e3d3
- circos with two new parameters added: col1.selection and col2.selection · 998fdcb3
  Gael MILLOT authored 10 months ago
  
  998fdcb3
Mar 08, 2024
- comments of fred param in config file added · 4d97a0df
  Gael MILLOT authored 1 year ago
  
  4d97a0df
- parall ok. Everything works · 380b328e
  Gael MILLOT authored 1 year ago
  
  380b328e
Mar 07, 2024
- save tempo · 046a2a26
  Gael MILLOT authored 1 year ago
  
  046a2a26
Mar 06, 2024
- ITOL problem fixed, trying to parallelize translation process · a3016c54
  Gael MILLOT authored 1 year ago
  
  a3016c54
Mar 05, 2024
- Fred phylo added but still an error in the ITOL process · 9290f206
  Gael MILLOT authored 1 year ago
  
  9290f206
Mar 04, 2024
- all tree terms changed to germ_tree and run ok · b937a7c6
  Gael MILLOT authored 1 year ago
  
  b937a7c6
Mar 01, 2024
- singu replaced by apptainer · 06aee387
  Gael MILLOT authored 1 year ago
  
  06aee387
- all tree terms changed to germ_tree · 03df259b
  Gael MILLOT authored 1 year ago
  
  03df259b
- removal of xlsx2fasta.R here because has its own repo now · 123672e6
  Gael MILLOT authored 1 year ago
  
  123672e6
- push before integrating Fred tree pipeline · 34822060
  Gael MILLOT authored 1 year ago
  
  34822060
Dec 20, 2023
- release v10.2: xlsx2fasta.R file: error fixed for the fasta by categ · 5c0a4f7c
  Gael MILLOT authored 1 year ago
  
  v10.2
  
  5c0a4f7c