Big update : Add Rpackage, Add peak max coverage, Add mean coverage calc, Add...
Big update : Add Rpackage, Add peak max coverage, Add mean coverage calc, Add Tars scripts, Optimize whole workflow
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- INSTALL.txt 9 additions, 0 deletionsINSTALL.txt
- README.txt 0 additions, 0 deletionsREADME.txt
- RunSlurm.sh 0 additions, 0 deletionsRunSlurm.sh
- example/Liver_exp_design.txt 0 additions, 0 deletionsexample/Liver_exp_design.txt
- run.sh 0 additions, 0 deletionsrun.sh
- runServer.sh 0 additions, 0 deletionsrunServer.sh
- src/bash/genome.sh 0 additions, 0 deletionssrc/bash/genome.sh
- src/bash/mapping.sh 0 additions, 0 deletionssrc/bash/mapping.sh
- src/bash/peak_detection.sh 1 addition, 1 deletionsrc/bash/peak_detection.sh
- src/bash/seqdepth.sh 0 additions, 0 deletionssrc/bash/seqdepth.sh
- src/bash/setup.sh 5 additions, 0 deletionssrc/bash/setup.sh
- src/bash/windows_cov.sh 0 additions, 0 deletionssrc/bash/windows_cov.sh
- src/bash_slurm/RunAfterQC.sh 0 additions, 0 deletionssrc/bash_slurm/RunAfterQC.sh
- src/bash_slurm/RunBowtieRNAMapping.sh 0 additions, 0 deletionssrc/bash_slurm/RunBowtieRNAMapping.sh
- src/bash_slurm/RunFastQC.sh 0 additions, 0 deletionssrc/bash_slurm/RunFastQC.sh
- src/bash_slurm/RunFinalize.sh 0 additions, 0 deletionssrc/bash_slurm/RunFinalize.sh
- src/bash_slurm/RunHTSeq.sh 0 additions, 0 deletionssrc/bash_slurm/RunHTSeq.sh
- src/bash_slurm/RunHTSeqPeaks.sh 0 additions, 0 deletionssrc/bash_slurm/RunHTSeqPeaks.sh
- src/bash_slurm/RunMapping.sh 0 additions, 0 deletionssrc/bash_slurm/RunMapping.sh
- src/bash_slurm/RunMeanBigWig.sh 0 additions, 0 deletionssrc/bash_slurm/RunMeanBigWig.sh
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