Update README.md

README.md

@@ -8,6 +8,8 @@ Biological material & question:
 
 **Datasets used for practical:** 
 
+Giulia Manina
+Melanie Hamon
 
 
 ## Data
@@ -15,21 +17,9 @@ Biological material & question:
 
 
 
-**ChIP-seq Hands-On:**
+**Annotation  Hands-On:**
 
 ```
-GSM2629955 SRR5572646	ChIP-seq_H3K27ac_D4_shCtrl_rep1
-GSM2629956 SRR5572647	ChIP-seq_H3K27ac_D4_shCtrl_rep2
-GSM2629961 SRR5572652	ChIP-seq_INPUT_D4_shCtrl_rep1
-GSM2629962 SRR5572653	ChIP-seq_INPUT_D4_shCtrl_rep2
-GSM2629967 SRR5572658	ChIP-seq_H3K27ac_D4_shUbc9_rep1
-GSM2629968 SRR5572659	ChIP-seq_H3K27ac_D4_shUbc9_rep2
-GSM2629973 SRR5572664	ChIP-seq_INPUT_D4_shUbc9_rep1
-GSM2629974 SRR5572665	ChIP-seq_INPUT_D4_shUbc9_rep2
-GSM2629977 SRR5572668	ChIP-seq_Klf4_D4_shCtrl_rep1
-GSM2629978 SRR5572669	ChIP-seq_Klf4_D4_shCtrl_rep2
-GSM2629985 SRR5572676	ChIP-seq_Klf4_D4_shUbc9_rep1
-GSM2629986 SRR5572677	ChIP-seq_Klf4_D4_shUbc9_rep2
 ```
 
 
@@ -49,10 +39,11 @@ GSM2629996 SRR5572692	ATAC-seq_D4_shUbc9_rep3
 
 | Course    | training        | 
 |-----------|--------------------|
-| ChIPseq: QC metrics | [Hands-on](Monday/ePeak_QC_metrics.md)  |
-| ChIPseq: Peak calling | [Hands-on](Tuesday/ePeak_PeakCalling.md)  |
-| Visualization: IGV | [Hands-on](Tuesday/IGV.md)  |
-| Visualization: Deeptools | [Hands-on](Tuesday/Deeptools.md)  |
+| Functional annotation: Annotation basics | [Hands-on](Monday/Annotation_basics.Rmd)  |
+| Functional annotation: Annotation advanced | [Hands-on](Monday/Annotation_advanced.md)  |
+| Integration: Functional integration  | [Hands-on](Tuesday/Functional integration.Rmd)  |
+| Functional analysis: ORA and GSEA | [Hands-on](Tuesday/ORA_and_GSEA.Rmd)  |
+| Functional analysis: GREAT | [Hands-on](Tuesday/GREAT.md)  |
 | ATACseq: analysis | [Hands-on](Wednesday/ATACflow.md)  |
 | ChIPseq: Differential binding | [Hands-on](Thursday/chipflowR.md)  |
 | ChIPseq: Peak annotation | [Hands-on](Thursday/peak_annotation.Rmd )  |