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Update README.md

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# PHINDaccess FUNOMICs # PHINDaccess FUNOMICs
## Material for practicals
Biological material & question:
**Datasets used for practical:**
Giulia Manina
Melanie Hamon
## Data
**Annotation Hands-On:**
```
```
**ATAC-seq Hands-On:**
```
```
## Hands-on programme ## Hands-on programme
| Course | training | | Course | training |
...@@ -37,16 +9,18 @@ Melanie Hamon ...@@ -37,16 +9,18 @@ Melanie Hamon
| Functional annotation: Annotation advanced | [Hands-on](Monday/Annotation_advanced.md) | | Functional annotation: Annotation advanced | [Hands-on](Monday/Annotation_advanced.md) |
| Integration: Functional integration | [Hands-on](Tuesday/Functional integration.Rmd) | | Integration: Functional integration | [Hands-on](Tuesday/Functional integration.Rmd) |
| Functional analysis: ORA and GSEA | [Hands-on](Tuesday/ORA_and_GSEA.Rmd) | | Functional analysis: ORA and GSEA | [Hands-on](Tuesday/ORA_and_GSEA.Rmd) |
| Functional analysis: GREAT | [Hands-on](Tuesday/GREAT.md) | | Functional analysis: GREAT | [Hands-on](Tuesday/GREAT/GREAT_analysis_forEpigenomicData.md) |
| ATACseq: analysis | [Hands-on](Wednesday/ATACflow.md) | | Functional analysis: methylGSA | [Hands-on](Tuesday/methylGSA_Functional_analysis/FuncAnalysis_methylGSA.Rmd) |
| ChIPseq: Differential binding | [Hands-on](Thursday/chipflowR.md) | | Descriptive analysis: analysis | [Hands-on](Wednesday/Descriptive_analysis.Rmd) |
| ChIPseq: Peak annotation | [Hands-on](Thursday/peak_annotation.Rmd ) | | Predictive analysis: analysis | [Hands-on](Wednesday/PLS.Rmd) |
| ChIPseq: Motif finding | [Hands-on](Thursday/MEME.md) | | Integration: Differential binding | [Hands-on](Wednesday/MFA.Rmd) |
| Integration: Differential binding | [Hands-on](Wednesday/ICA.Rmd) |
| Networks: PPIs | [Hands-on](Thursday/STRING.md ) |
| Networks: Regulatory networks | [Hands-on](Thursday/OmicsNet.md) |
## Friday session : questions ## Friday session : questions
Feel free to add your questions here : Feel free to add your questions here:
https://docs.google.com/document/d/1MjZz2wyQqiZbSD386N6xOYZvPDgibRvBerXzbgKRJp8/edit?usp=sharing https://docs.google.com/document/d/1MjZz2wyQqiZbSD386N6xOYZvPDgibRvBerXzbgKRJp8/edit?usp=sharing
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