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correction of minor bugs - update doc
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- README.md 111 additions, 43 deletionsREADME.md
- Snakefile 26 additions, 14 deletionsSnakefile
- Snakefile_atac.smk 14 additions, 12 deletionsSnakefile_atac.smk
- Snakefile_noCTL.smk 24 additions, 14 deletionsSnakefile_noCTL.smk
- apptainer/.gitkeep 0 additions, 0 deletionsapptainer/.gitkeep
- apptainer/epeak_v1.0.def 131 additions, 0 deletionsapptainer/epeak_v1.0.def
- apptainer/epeak_v2.0.def 149 additions, 0 deletionsapptainer/epeak_v2.0.def
- config/annotation_config.txt 1 addition, 1 deletionconfig/annotation_config.txt
- config/cluster_config.json 6 additions, 1 deletionconfig/cluster_config.json
- config/config.yaml 19 additions, 19 deletionsconfig/config.yaml
- config/config_atac.yaml 16 additions, 15 deletionsconfig/config_atac.yaml
- config/design_atac.txt 4 additions, 0 deletionsconfig/design_atac.txt
- config/design_noCTL.txt 5 additions, 1 deletionconfig/design_noCTL.txt
- data-annot/hg38.txt 0 additions, 0 deletionsdata-annot/hg38.txt
- env.sh 3 additions, 0 deletionsenv.sh
- images/epeak_workflow_atac.svg 1591 additions, 0 deletionsimages/epeak_workflow_atac.svg
- logs/slurm/EstimateLibraryComplexity/EstimateLibraryComplexity_SAMPLE=ATAC_D0_rep1.REF=hg38.err 30 additions, 0 deletions...stimateLibraryComplexity_SAMPLE=ATAC_D0_rep1.REF=hg38.err
- logs/slurm/EstimateLibraryComplexity/EstimateLibraryComplexity_SAMPLE=ATAC_D0_rep1.REF=hg38.out 0 additions, 0 deletions...stimateLibraryComplexity_SAMPLE=ATAC_D0_rep1.REF=hg38.out
- logs/slurm/EstimateLibraryComplexity/EstimateLibraryComplexity_SAMPLE=ATAC_D0_rep2.REF=hg38.err 30 additions, 0 deletions...stimateLibraryComplexity_SAMPLE=ATAC_D0_rep2.REF=hg38.err
- logs/slurm/EstimateLibraryComplexity/EstimateLibraryComplexity_SAMPLE=ATAC_D0_rep2.REF=hg38.out 0 additions, 0 deletions...stimateLibraryComplexity_SAMPLE=ATAC_D0_rep2.REF=hg38.out
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