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Commit 1fcaa428 authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
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fix star path

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...@@ -222,7 +222,7 @@ if config["star_mapping"]["do"]: ...@@ -222,7 +222,7 @@ if config["star_mapping"]["do"]:
star_mapping_pass1_input = adapters_output star_mapping_pass1_input = adapters_output
star_mapping_pass1_done = star_index_output_done star_mapping_pass1_done = star_index_output_done
star_mapping_pass1_index = star_index_output_dir star_mapping_pass1_index = star_index_output_dir
star_mapping_pass1_logs = "02-Mapping/{REF}/STAR//logs/{SAMPLE}_{REF}_init.out" star_mapping_pass1_logs = "02-Mapping/{REF}/STAR/logs/{SAMPLE}_{REF}_init.out"
star_mapping_pass1_output_prefix = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_" star_mapping_pass1_output_prefix = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_"
star_mapping_pass1_junctions = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_SJ.out.tab" star_mapping_pass1_junctions = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_SJ.out.tab"
star_mapping_pass1_bam = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_Aligned.sortedByCoord.out.bam" star_mapping_pass1_bam = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_init_Aligned.sortedByCoord.out.bam"
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