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Commit 63855a45 authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
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cutadapt by default

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config/config.yaml
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......@@ -122,7 +122,7 @@ fastq_screen:
adapters:
remove: yes
tool: alienTrimmer # could be alienTrimmer or cutadapt
tool: cutadapt # could be alienTrimmer or cutadapt
cutadapt_file: file:config/TruSeq_Stranded_RNA.fa
alien_file: config/TruSeq_Stranded_RNA.fa
m: 25
......
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