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Commit 65959f7e authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
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fixe maestro path

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config/config.yaml
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...@@ -159,7 +159,7 @@ pseudomapping: ...@@ -159,7 +159,7 @@ pseudomapping:
do: yes do: yes
fasta: /pasteur/zeus/projets/p01/BioIT/Genomes/hg38/hg38_cDNA.fa fasta: /pasteur/zeus/projets/p01/BioIT/Genomes/hg38/hg38_cDNA.fa
gtf: /pasteur/zeus/projets/p01/BioIT/Genomes/hg38/hg38.gtf gtf: /pasteur/zeus/projets/p01/BioIT/Genomes/hg38/hg38.gtf
options: "--single" options: "--single -l 75 -s 15"
kmer: 31 kmer: 31
threads: 12 threads: 12
...@@ -194,7 +194,7 @@ feature_counts: ...@@ -194,7 +194,7 @@ feature_counts:
bamCoverage: bamCoverage:
do: yes do: yes
options: "--filterRNAstrand forward --effectiveGenomeSize 2913022398 --normalizeUsing RPKM" options: "--filterRNAstrand forward --effectiveGenomeSize 2913022398 "
threads: 4 threads: 4
...@@ -209,4 +209,4 @@ bamCoverage: ...@@ -209,4 +209,4 @@ bamCoverage:
multiqc: multiqc:
options: " -f -x 02-Mapping/*/*_init_*" options: " -f -x 02-Mapping/*/*/*_init_* -x .snakemake"
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