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Commit 9514876e authored by Rachel LEGENDRE's avatar Rachel LEGENDRE
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remove double / in path

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...@@ -234,7 +234,7 @@ if config["star_mapping"]["do"]: ...@@ -234,7 +234,7 @@ if config["star_mapping"]["do"]:
star_mapping_pass2_input = adapters_output star_mapping_pass2_input = adapters_output
star_mapping_pass2_done = star_index_output_done star_mapping_pass2_done = star_index_output_done
star_mapping_pass2_index = star_index_output_dir star_mapping_pass2_index = star_index_output_dir
star_mapping_pass2_logs = "02-Mapping/{REF}/STAR//logs/{SAMPLE}_{REF}.out" star_mapping_pass2_logs = "02-Mapping/{REF}/STAR/logs/{SAMPLE}_{REF}.out"
star_mapping_pass2_output_prefix = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_" star_mapping_pass2_output_prefix = "02-Mapping/{REF}/STAR/{SAMPLE}_{REF}_"
star_mapping_pass2_junctions = expand("02-Mapping/{{REF}}/STAR/{SAMPLE}_{{REF}}_init_SJ.out.tab", SAMPLE=samples) star_mapping_pass2_junctions = expand("02-Mapping/{{REF}}/STAR/{SAMPLE}_{{REF}}_init_SJ.out.tab", SAMPLE=samples)
star_mapping_pass2_bam = star_mapping_pass1_bam star_mapping_pass2_bam = star_mapping_pass1_bam
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