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Commit ce84c726 authored by Rachel  LEGENDRE's avatar Rachel LEGENDRE
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Update Snakefile

parent dc3938fc
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...@@ -41,7 +41,7 @@ RULES = os.path.join("workflow", "rules") ...@@ -41,7 +41,7 @@ RULES = os.path.join("workflow", "rules")
#------------------------------------------------------- #-------------------------------------------------------
# list of all files in the directory 'input_dir' # list of all files in the directory 'input_dir'
filenames = [f for f in glob.glob(config["input_dir"]+"*") if match(r'.*'+config["input_mate"]+config["input_extension"]+'', f)] filenames = [f for f in glob.glob(config["input_dir"]+"/*") if match(r'.*'+config["input_mate"]+config["input_extension"]+'', f)]
if not filenames : if not filenames :
raise ValueError("Please provides input fastq files") raise ValueError("Please provides input fastq files")
......
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